Preheat oven to 375°F.
Pick your squash, cut it in half and remove strings and seeds. Wrap cut side of each in foil. Lay each half, cut side-down, on a baking sheet with enough water to cover the surface of the baking sheet.
Bake in preheated oven for 30 minutes, or until fork tender (cook time will vary depending on the size of your squash). The skin will start to bubble a bit when it is totally done. Remove from the oven and allow to sit until it is cool enough to handle.
Comb through the open sides of the cooked squash from top to bottom with a fork, creating lengths of ”noodles.”
Measure out 1 pound of “noodles” in a large bowl. Mix in beaten egg, flour, chiles, diced chipotle pepper, salt and pepper. The mixture should hold together well, but drain in a colander if it is watery.
Heat 1 tablespoon of oil in a large skillet over medium-high heat. Spoon heaping tablespoons of the latke mixture onto the hot oil and gently flatten to an approximately 3-inch diameter. Fry until lightly browned, then flip to fry on the other side.
Remove cooked latkes to a foil-lined baking sheet and keep warm in a 200°F oven until ready to serve.
To reheat later, use an oven or toaster oven, as a microwave will not keep the latkes crisp.